RnoEX0056698 @ rn6
Exon Skipping
Gene
ENSRNOG00000017172 | Mvb12b
Description
multivesicular body subunit 12B [Source:RGD Symbol;Acc:1309709]
Coordinates
chr3:12883430-12892860:-
Coord C1 exon
chr3:12892764-12892860
Coord A exon
chr3:12886487-12886616
Coord C2 exon
chr3:12883430-12883552
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCCTCCTCCCCTTAGAGG
3' ss Score
10.69
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
AGTCATTTGGGGAATGTGCTGGTGGACATGAAACTCATCGACGTCAAGGACACGTTGCCTGTGGGCTTCATTCCCATCCAGGAGACGGTGGATACAC
Seq A exon
AGGAGGTGGTCTTCAGGAAGAAGAGGCTATGCATTAAGTTCATTCCCCGGGATTCAACCGAAGCCGCCATTTGTGACATTCGCATCATGGGCCGGACCAAGCAGGCTCCTCCCCAGTACACATTTATCGG
Seq C2 exon
GGAACTGAACAGCATGGGCATCTGGTATCGAATGGGCAGAGTGCCAAGAAACCATGACTCATCTCAACCCACCACGCCCTCCCAGTCATCAGCTGCTTCCACCCCAGCCCCAAACCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017172-'15-14,'15-9,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.524
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=FE(17.1=100)
C2:
PF102404=DUF2464=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTGGGGAATGTGCTGGT
R:
CTGGGAAGGTTTGGGGCTG
Band lengths:
218-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]