GgaEX6015662 @ galGal3
Exon Skipping
Gene
ENSGALG00000000950 | FAM125B
Description
NA
Coordinates
chr17:10701322-10705060:+
Coord C1 exon
chr17:10701322-10701418
Coord A exon
chr17:10704396-10704525
Coord C2 exon
chr17:10704941-10705060
Length
130 bp
Sequences
Splice sites
3' ss Seq
GTCCTGGATTGTTTTTGCAGAAG
3' ss Score
6.47
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
AGTCACTTAGGAAATGTCTTGGTTGACATGAAGCTCATTGACATCAAGGACACTTTACCTCTGGGCTTCATCCCCATTCAAGAGACTGTTGACACAC
Seq A exon
AAGAAACAGCTTTCAGAAAGAAGAGGCTGTGCATTAAATTTATCCCTCGAGATTCTACAGAGGCAGCCATCTGTGATATCCGAATCCTGGGGAGATCTAAGCAAGCCCCTCCTCAGTACACGTTCATAGG
Seq C2 exon
GGAGTTGAACAACATGGGTATTTGGTACCGGATGGGCAGAGTTCCCCGCAACCATGAATCTTCACAGCCTGCTGCTCCTTCCCAAGCTCCATCTCCAACACCAGCTCCCAGCCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000950-'8-6,'8-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.585
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=FE(17.1=100)
C2:
PF102404=DUF2464=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACTTAGGAAATGTCTTGGT
R:
AGGCTGGGAGCTGGTGTT
Band lengths:
211-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]