MmuEX6100701 @ mm10
Exon Skipping
Gene
ENSMUSG00000038740 | Mvb12b
Description
multivesicular body subunit 12B [Source:MGI Symbol;Acc:MGI:1919793]
Coordinates
chr2:33825048-33834633:-
Coord C1 exon
chr2:33834537-33834633
Coord A exon
chr2:33827682-33827811
Coord C2 exon
chr2:33825048-33825170
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTCTATCCTCCTTTCCTTAGAGG
3' ss Score
9.2
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
AGTCATTTGGGGAATGTGCTGGTGGACATGAAGCTCATCGATGTCAAGGACACATTGCCTGTGGGCTTCATCCCCATCCAAGAGACCGTGGATACAC
Seq A exon
AGGAGGTGGTCTTTAGGAAGAAGCGGCTCTGCATTAAGTTTATCCCCCGGGATTCAACTGAAGCTGCCATCTGTGACATTCGCATCATGGGCCGGACCAAGCAGGCACCGCCCCAGTACACGTTTATCGG
Seq C2 exon
GGAACTGAACAGCATGGGCATCTGGTACCGAATGGGCAGAGTGCCAAGAAACCATGACTCGTCTCAGCCCACCACGCCCTCCCAGTCATCAGCCTCTTCTACCCCAGCCCCAAACCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038740-'27-23,'27-19,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.617
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=FE(17.1=100)
C2:
PF102404=DUF2464=PD(23.1=95.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTGGGGAATGTGCTGGT
R:
CTGGGAAGGTTTGGGGCTG
Band lengths:
218-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types