HsaEX0023910 @ hg19
Exon Skipping
Gene
ENSG00000196814 | FAM125B
Description
family with sequence similarity 125, member B [Source:HGNC Symbol;Acc:23368]
Coordinates
chr9:129148841-129184227:+
Coord C1 exon
chr9:129148841-129148937
Coord A exon
chr9:129154345-129154474
Coord C2 exon
chr9:129184133-129184227
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCTATTGTCCTTTCCTTCAGAGG
3' ss Score
9.69
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGTCATCTGGGGAACGTGTTAGTAGATATGAAGCTCATTGACATCAAGGACACACTGCCTGTGGGCTTCATCCCAATTCAGGAGACGGTGGACACAC
Seq A exon
AGGAAGTGGCTTTTAGGAAGAAGAGGCTGTGCATTAAATTTATTCCACGGGATTCAACGGAAGCTGCGATTTGTGACATTCGGATCATGGGCCGGACCAAGCAGGCCCCGCCTCAGTACACGTTTATTGG
Seq C2 exon
GCACATCTCCCTAACACTTCCTGCCACCTTCCGAGGCAGGAACAGCACCCGGACGGACTACGAGTACCAGCACTCCAATTTGTATGCCATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196814_MULTIEX1-2/4=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.121
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=FE(17.1=100)
C2:
PF102404=DUF2464=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCATCTGGGGAACGTGTTAG
R:
TGGCATACAAATTGGAGTGCTG
Band lengths:
186-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)