RnoEX0056692 @ rn6
Exon Skipping
Gene
ENSRNOG00000017949 | Mvb12a
Description
multivesicular body subunit 12A [Source:RGD Symbol;Acc:735220]
Coordinates
chr16:19974090-19976344:+
Coord C1 exon
chr16:19974090-19974186
Coord A exon
chr16:19975883-19976009
Coord C2 exon
chr16:19976225-19976344
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGCCCCCACTCCCAGGGA
3' ss Score
10.02
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
AACCCTCAGGACAATGTGGTAGTGGACATGCAGATCGTGATGGACAAGGGGCCCCTGCCACCAGGCTTCTCTACAGTCAACGACCCTCAGGATGCCA
Seq A exon
GGACCTCTGTGTCCAAGAAGAAGCGCATGTGTGTGAAGCTGATGCCCCTGGGGACGGCAGACGTGGTAGTGAGTGACGTGAAGCTCAGTGGGAAAACCAAGACCGTGCCTGGGTATCTGCGAGTGGG
Seq C2 exon
GGACATTGGTGGCTTTGCCATCTGGTGCAAGAAATCCAAAGCCCCAAAGCTGGTGCCCAAGCCCGGCACACTCAGCCAGGACATGCGAGGCCTCTCACTGGACCAACCCAAAGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017949-'3-7,'3-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=0.116 C2=0.512
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=FE(16.7=100)
C2:
PF102404=DUF2464=FE(15.9=100)
Main Skipping Isoform:
ENSRNOT00000024413fB9160
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCAGGACAATGTGGTAGT
R:
GCTCTTTGGGTTGGTCCAGTG
Band lengths:
212-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]