BtaEX6036998 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003914 | MVB12A
Description
Bos taurus family with sequence similarity 125, member A (MVB12A), mRNA. [Source:RefSeq mRNA;Acc:NM_001034283]
Coordinates
chr7:5612633-5614685:-
Coord C1 exon
chr7:5614589-5614685
Coord A exon
chr7:5613102-5613228
Coord C2 exon
chr7:5612633-5612752
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCCACCCCTCCCCTTCCCAGAGG
3' ss Score
9.41
5' ss Seq
AGGGTACGC
5' ss Score
8.18
Exon sequences
Seq C1 exon
AATCCACAGGAGAACGTGGTGGTCGACATCCAGATCCTAGTGGACAAGAGCCCCCTCCCGCCGGGATTCTCACCAGTCTGCGACCCCCTGGACTCGA
Seq A exon
AGGCCTCCGTGTCCAAGAAGAAACGCATGTGCGTGAAGCTGGTGCCCTTGGGGGCCGCGGACACAGCTGTCTTTGACATCCGACTGAGTGGGAAAACCAAGACAGTCCCTGGATACCTGCGAGTAGG
Seq C2 exon
GGACATGGGGGGCTTTGCCATTTGGTGCCGGAAGGCCAAGGCCCCTCGGCCAGTGCCCAAGCCCCGAGCTCTTAGCCGAGACGTGAGGGACCTCTCCCTGGACTCGCCGGGCCAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003914-'2-4,'2-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.488
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=FE(16.7=100)
C2:
PF102404=DUF2464=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCACAGGAGAACGTGGTG
R:
CGAGTCCAGGGAGAGGTCC
Band lengths:
203-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]