DreEX0048101 @ danRer10
Exon Skipping
Gene
ENSDARG00000079478 | mvb12bb
Description
multivesicular body subunit 12Bb [Source:ZFIN;Acc:ZDB-GENE-080414-2]
Coordinates
chr8:33511906-33519833:-
Coord C1 exon
chr8:33519737-33519833
Coord A exon
chr8:33515574-33515703
Coord C2 exon
chr8:33511906-33512013
Length
130 bp
Sequences
Splice sites
3' ss Seq
TATTTCTCTTTCTGTCTCAGAGG
3' ss Score
9.62
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
AAGCAATTATGCAACGTGGTGGTGGATATGAAGCTGATGGACCTGAAGGACTGTTTGCCAGAGGGCTTCACTCCCATCCAAGACACCATGGATACCC
Seq A exon
AGGAACAGGCTTTGAGGAAGGAGCGGCTGTGTGTGAAGTTCGTCCCCCGAAACAGCACTGATACGGCGATCTGCGATGTGCTTATACAGGGAAAATCAAAGCACAGCCTCGCTAATTATACATTTATAGG
Seq C2 exon
AGAGCTGAATGGTTTGGGGATTTGGTACCAGCTGGGAAAAGTCCCTAAGTCGCATGACACAACACAGAAAACATTGCCTACCTCTACAAGTATTTGTAGCATTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079478-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.162
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(13.0=100)
A:
PF102404=DUF2464=FE(17.4=100)
C2:
PF102404=DUF2464=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTATGCAACGTGGTGGTGG
R:
CTGGCAATGCTACAAATACTTGTA
Band lengths:
202-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]