MmuEX0017902 @ mm10
Exon Skipping
Gene
ENSMUSG00000031813 | Mvb12a
Description
multivesicular body subunit 12A [Source:MGI Symbol;Acc:MGI:1920961]
Coordinates
chr8:71543133-71545350:+
Coord C1 exon
chr8:71543133-71543231
Coord A exon
chr8:71543387-71543483
Coord C2 exon
chr8:71545224-71545350
Length
97 bp
Sequences
Splice sites
3' ss Seq
GCCCCCTCTCGTGCTCCCAGAAC
3' ss Score
9.47
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
ATCACCTGCACCGTGGAGGGCGGGACGGCCAGCTTCGGCCGAGGCTTCGCGCAGAAAGCCGGCTACTTCCTGTGCCTGAGCACGCTGGGCATCCCGGAG
Seq A exon
AACCCTCAGGACAATGTGGTAGTGGACATGCAGATCGTGATGGACAAGGGCCCACTGCCGTCAGGCTTCTCTGCAGTCAACGACCCTCAGGATATCA
Seq C2 exon
AGGCCTCTGTGTCCAAGAAGAAACGCATGTGTGTGAAGCTGATGCCCCTGGGGACAGCTGACGTGGTTGTGAGTGACGTGAAGCTGAGTGGGAAGACTAAGACCGTGCCTGGATACCTGCGTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031813_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.015 A=0.455 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=FE(12.7=100)
C2:
PF102404=DUF2464=FE(16.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAAGCCGGCTACTTCCTG
R:
CAGGTATCCAGGCACGGTCTT
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types