RnoEX0056691 @ rn6
Exon Skipping
Gene
ENSRNOG00000017949 | Mvb12a
Description
multivesicular body subunit 12A [Source:RGD Symbol;Acc:735220]
Coordinates
chr16:19973857-19976009:+
Coord C1 exon
chr16:19973857-19973955
Coord A exon
chr16:19974090-19974186
Coord C2 exon
chr16:19975883-19976009
Length
97 bp
Sequences
Splice sites
3' ss Seq
ACCCTCTCTCGTGCTCCCAGAAC
3' ss Score
10.02
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
Exon sequences
Seq C1 exon
ATCACCTGTACCGTGGAGGGCGCGACGGCCAGCTTCGGCCGAGGCTTCGCGCAGAAGGCCGGCTACTTCCTGTGCCTGAGCACACTGGGTATCCCAGAG
Seq A exon
AACCCTCAGGACAATGTGGTAGTGGACATGCAGATCGTGATGGACAAGGGGCCCCTGCCACCAGGCTTCTCTACAGTCAACGACCCTCAGGATGCCA
Seq C2 exon
GGACCTCTGTGTCCAAGAAGAAGCGCATGTGTGTGAAGCTGATGCCCCTGGGGACGGCAGACGTGGTAGTGAGTGACGTGAAGCTCAGTGGGAAAACCAAGACCGTGCCTGGGTATCTGCGAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017949-'2-6,'2-2,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.621 C2=0.116
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=FE(12.7=100)
C2:
PF102404=DUF2464=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCTGTACCGTGGAGGG
R:
TCACGTCACTCACTACCACGT
Band lengths:
180-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]