MmuEX6036331 @ mm10
Exon Skipping
Gene
ENSMUSG00000031813 | Mvb12a
Description
multivesicular body subunit 12A [Source:MGI Symbol;Acc:MGI:1920961]
Coordinates
chr8:71542922-71543483:+
Coord C1 exon
chr8:71542922-71543057
Coord A exon
chr8:71543133-71543231
Coord C2 exon
chr8:71543387-71543483
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATGACCTGTGCGTCCCGCAGATC
3' ss Score
10.73
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GAGGTTCCGGTCCCTCCGAGGGCTGTAGCTGCCTTCTGAGCTCCCAGGAAGGATGGATCCCGGGACGGACTCGGCGCCGCTTGCTGGCTTGGTTTGGTCGTCGGCCTCGGCGCCGCCGCCGCCGGGTTTCAGCGCG
Seq A exon
ATCACCTGCACCGTGGAGGGCGGGACGGCCAGCTTCGGCCGAGGCTTCGCGCAGAAAGCCGGCTACTTCCTGTGCCTGAGCACGCTGGGCATCCCGGAG
Seq C2 exon
AACCCTCAGGACAATGTGGTAGTGGACATGCAGATCGTGATGGACAAGGGCCCACTGCCGTCAGGCTTCTCTGCAGTCAACGACCCTCAGGATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031813-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.015 C2=0.455
Domain overlap (PFAM):
C1:
PF102404=DUF2464=PU(34.5=71.4)
A:
PF102404=DUF2464=FE(12.7=100)
C2:
PF102404=DUF2464=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCCAGGAAGGATGGATC
R:
GTCGTTGACTGCAGAGAAGCC
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types