GgaEX6047752 @ galGal3
Exon Skipping
Gene
ENSGALG00000013433 | FAM125A
Description
NA
Coordinates
chrUn_random:30296231-30296727:-
Coord C1 exon
chrUn_random:30296629-30296727
Coord A exon
chrUn_random:30296431-30296520
Coord C2 exon
chrUn_random:30296231-30296327
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACCCTCTGCGCACCCCACAGATC
3' ss Score
8.74
5' ss Seq
CCGGTACGG
5' ss Score
9.77
Exon sequences
Seq C1 exon
GGGGAGGTGGCCGTCATGGCGGCGGAGGAGGAAGCGGCTCCGCTGAGCGGTGTGGGCTGGGCGGCGGGGCCCGAGTCGGCTCCAGCGGGCTGGAGCGTG
Seq A exon
ATCACCACCAGCGTTGAGGGCAGCGCGGCCAACCTGGGCAAAGGCTTCGGACACAAGGGCGGGTACCTGTGTGTGAGCACCGCAGCTCCG
Seq C2 exon
GGCTCGGCCGGGCCTGTGGTGACCGATGTCCAGGTGCTGAGCGATCGAAATCCGCAACCCGCGGGCTACAGCCGTGCCCCCGAGTTCCCAGAGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013433-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
80%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.033 C2=0.788
Domain overlap (PFAM):
C1:
PF102404=DUF2464=PU(8.1=71.4)
A:
PF102404=DUF2464=FE(11.7=100)
C2:
PF102404=DUF2464=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGGAAGCGGCTCC
R:
GAGGCTCTGGGAACTCGGG
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]