HsaEX6093828 @ hg19
Exon Skipping
Gene
ENSG00000141971 | FAM125A
Description
family with sequence similarity 125, member A [Source:HGNC Symbol;Acc:25153]
Coordinates
chr19:17530856-17531443:+
Coord C1 exon
chr19:17530856-17531034
Coord A exon
chr19:17531122-17531220
Coord C2 exon
chr19:17531347-17531443
Length
99 bp
Sequences
Splice sites
3' ss Seq
GACCCGCGTCCTCCCGGTAGATC
3' ss Score
9.41
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTAGTTCGGTCGCGAGCGCTGCCGTCGGGAGGCGCTCCGAGGTTCGAGGCTGTGCCCCGCGACCCCGCCTTCGGCGCTCGGCTCGCAGGATGGATCCCGTACCCGGGACAGACTCGGCGCCGCTGGCTGGCCTGGCCTGGTCGTCGGCCTCTGCACCCCCGCCGCGGGGGTTCAGCGCG
Seq A exon
ATCTCCTGCACCGTCGAGGGGGCACCCGCCAGCTTTGGCAAGAGCTTCGCGCAGAAATCTGGCTACTTCCTGTGCCTTAGTTCTCTGGGCAGCCTAGAG
Seq C2 exon
AACCCGCAGGAGAACGTGGTGGCCGATATCCAGATCGTGGTGGACAAGAGCCCCCTGCCGCTGGGCTTCTCCCCCGTCTGCGACCCCATGGATTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141971-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=PU(14.8=66.7)
A:
PF102404=DUF2464=FE(12.7=100)
C2:
PF102404=DUF2464=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGAGGTTCGAGGCTGT
R:
GATATCGGCCACCACGTTCTC
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)