BtaEX6036996 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003914 | MVB12A
Description
Bos taurus family with sequence similarity 125, member A (MVB12A), mRNA. [Source:RefSeq mRNA;Acc:NM_001034283]
Coordinates
chr7:5614589-5615225:-
Coord C1 exon
chr7:5615049-5615225
Coord A exon
chr7:5614828-5614926
Coord C2 exon
chr7:5614589-5614685
Length
99 bp
Sequences
Splice sites
3' ss Seq
GACCAGCGTTTGCGCTGCAGATC
3' ss Score
6.4
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTAGTTCAGGTTCCTGTCGAACTCCGTAGTCCAGCTGCGGCTGGAAGGTCCGAGGCTGTCTGCCGCCTTCGGTGCCTGTTTTGGAGGATGGATCCGGGGCCCGGGGCCAACGGGATGCCGTTGGCTGGCTTAGCCTGGTCGTCGGCCTCGGCGCCCCCGCCGCGGGGATTCAGTGCG
Seq A exon
ATCTCCTGCACTGTGGAGGGGACGCCCGCCAGCTTCGGCAAGACTTTCGCTCAGAAATCTGGCTACTTCCTGTGCCTCAATCCTTTGGGCAGCCTAGAG
Seq C2 exon
AATCCACAGGAGAACGTGGTGGTCGACATCCAGATCCTAGTGGACAAGAGCCCCCTCCCGCCGGGATTCTCACCAGTCTGCGACCCCCTGGACTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003914-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF102404=DUF2464=PU(7.9=66.7)
A:
PF102404=DUF2464=FE(12.7=100)
C2:
PF102404=DUF2464=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAACTCCGTAGTCCAGCTG
R:
CACCACGTTCTCCTGTGGATT
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]