RnoEX0056690 @ rn6
Exon Skipping
Gene
ENSRNOG00000017949 | Mvb12a
Description
multivesicular body subunit 12A [Source:RGD Symbol;Acc:735220]
Coordinates
chr16:19973636-19974186:+
Coord C1 exon
chr16:19973636-19973781
Coord A exon
chr16:19973857-19973955
Coord C2 exon
chr16:19974090-19974186
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGACCTGTGCGACCCGCAGATC
3' ss Score
9.21
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTTGTAGTCCGAGGTTCCGGACCCTCCGAGGGCGTTAGCTGCCTTTTGAACTCCCAGGGAGGATGGATCCCGGGACGGATTCAACGCCGCTTGCCGCCCTGGTTTGGTCGTCCGCCTCGGCGCCGCCGCCGCCGGGTTTCAGCGCG
Seq A exon
ATCACCTGTACCGTGGAGGGCGCGACGGCCAGCTTCGGCCGAGGCTTCGCGCAGAAGGCCGGCTACTTCCTGTGCCTGAGCACACTGGGTATCCCAGAG
Seq C2 exon
AACCCTCAGGACAATGTGGTAGTGGACATGCAGATCGTGATGGACAAGGGGCCCCTGCCACCAGGCTTCTCTACAGTCAACGACCCTCAGGATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017949-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.000 C2=0.621
Domain overlap (PFAM):
C1:
PF102404=DUF2464=PU(22.0=71.4)
A:
PF102404=DUF2464=FE(12.7=100)
C2:
PF102404=DUF2464=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGTTAGCTGCCTTTTGAA
R:
CCCTTGTCCATCACGATCTGC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]