MmuEX6036331 @ mm9
Exon Skipping
Gene
ENSMUSG00000031813 | Fam125a
Description
family with sequence similarity 125, member A [Source:MGI Symbol;Acc:MGI:1920961]
Coordinates
chr8:74066829-74067382:+
Coord C1 exon
chr8:74066829-74066956
Coord A exon
chr8:74067032-74067130
Coord C2 exon
chr8:74067286-74067382
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATGACCTGTGCGTCCCGCAGATC
3' ss Score
10.73
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGTCCCTCCGAGGGCTGTAGCTGCCTTCTGAGCTCCCAGGAAGGATGGATCCCGGGACGGACTCGGCGCCGCTTGCTGGCTTGGTTTGGTCGTCGGCCTCGGCGCCGCCGCCGCCGGGTTTCAGCGCG
Seq A exon
ATCACCTGCACCGTGGAGGGCGGGACGGCCAGCTTCGGCCGAGGCTTCGCGCAGAAAGCCGGCTACTTCCTGTGCCTGAGCACGCTGGGCATCCCGGAG
Seq C2 exon
AACCCTCAGGACAATGTGGTAGTGGACATGCAGATCGTGATGGACAAGGGCCCACTGCCGTCAGGCTTCTCTGCAGTCAACGACCCTCAGGATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031813-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=0.010 C2=0.424
Domain overlap (PFAM):
C1:
PF102404=DUF2464=PU(22.0=71.4)
A:
PF102404=DUF2464=FE(12.7=100)
C2:
PF102404=DUF2464=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCCAGGAAGGATGGATC
R:
GTCGTTGACTGCAGAGAAGCC
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: