MmuEX0018733 @ mm10
Exon Skipping
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58106294-58113384:-
Coord C1 exon
chr18:58113247-58113384
Coord A exon
chr18:58107730-58107757
Coord C2 exon
chr18:58106294-58106413
Length
28 bp
Sequences
Splice sites
3' ss Seq
CCATTCCTTTGGCTCAGTAGAAT
3' ss Score
3.55
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CAATTCTCAACCAGACAATAGACATCTGTAAGCACCATGCCAATCTCTGTTTGAATGGACGGTGTATACCTACTGTTTCTAGCTACAGATGCGAGTGTAATATGGGCTACAAGCAGGATGCTAATGGAGATTGTATAG
Seq A exon
AATTGATGTATCAACCAAAAGTGTCAAT
Seq C2 exon
ATGTTGATGAATGTACATCCAATCCCTGCAGTAATGGAGATTGTGTTAACACACCTGGATCCTATTACTGTAAATGTCACGCTGGATTCCAGAGGACTCCTACGAAACAAGCGTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-'14-21,'14-20,15-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=66.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NO
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
ENSMUST00000025497fB1657
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGTTTGAATGGACGGTGT
R:
ACTGCAGGGATTGGATGTACA
Band lengths:
127-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types