RnoEX0035165 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53165204-53169987:-
Coord C1 exon
chr18:53169850-53169987
Coord A exon
chr18:53166626-53166654
Coord C2 exon
chr18:53165204-53165323
Length
29 bp
Sequences
Splice sites
3' ss Seq
CCGCTCCTTTGGCTCAGTAGGAT
3' ss Score
5.18
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CAATTCTCAACCAGACAATAGACATCTGTAAGCACCATGCCAACTTGTGTTTGAACGGACGTTGCATACCTACTGTTTCCAGCTACAGATGCGAATGTAACATGGGCTACAAGCAGGATGCTAATGGAGATTGTATAG
Seq A exon
GATTGATGGTATCAACCAAAAGTGTCAAT
Seq C2 exon
ATGTTGATGAATGTACATCAAACCCCTGCAGTCATGGAGATTGTGTTAACACACCTGGATCCTATTACTGTAAATGTCACGCTGGATTCCAGAGGACTCCTACGAAGCAAGCATGTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=68.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NO
C2:
PF126622=cEGF=PD(13.0=7.3),PF126622=cEGF=PU(83.3=48.8)
Main Inclusion Isoform:
ENSRNOT00000066548fB5397
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACGGACGTTGCATACCT
R:
CTCCATGACTGCAGGGGTTTG
Band lengths:
127-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]