MmuEX0019255 @ mm10
Exon Skipping
Gene
ENSMUSG00000035455 | Fignl1
Description
fidgetin-like 1 [Source:MGI Symbol;Acc:MGI:1890648]
Coordinates
chr11:11800288-11808959:-
Coord C1 exon
chr11:11808895-11808959
Coord A exon
chr11:11806096-11806215
Coord C2 exon
chr11:11800288-11803063
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATCTTTCTGTTCCATGCAGCTC
3' ss Score
9.42
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
ACTTCGCGCAGGCGCACTTCGAAAGGCGCGCTTTTCGGTGGCTGCGGTCCCGGCAGGGAGCACAG
Seq A exon
CTCATCCTGTGCTGATAACATCGAGAAGTGTTCAGTGCCTGGTAAAGTACATAGACCTTGCTTCACTTGGAACTCGGCCTTGATTTCTGCCGTTGGTCATAATCAGCAGAGTTCTCTCTA
Seq C2 exon
AACCTTTGACATGGAGACGTCCAGCTCCATGTCTGTGGAGACGACTAGGTCTGTGCAGGTGGACGAATGGCAGAAGAATTACTGTGTGGTTACATCCAGCATATGTACACCAAAGCAGAAGGCCGATGCATACCGTGCACTACTACTGCATATTCAGTATGCATATGCCAACTCCGAGATCTCTCAGGTCTTTGCTACCAACCTGTTCAAAAGGTATACAGAAAAATACTCTGCAATTATTGATTCTGACAATGTTGTAACTGGCTTGAATAACTATGCAGAGAGCATTTTTGCTTTGGCAGGATCTCGACAGGCTGACAGTAACAAGTGGCAGTCTGGATTGTCAATAGATAATGTTTTCAAAATGAGTTGTGTACAGGAGATGATGCAGGCTGGCAAGAAATTTGAAGAGTCTCTGTTGGAACCTGCTGATGCATCAGTAGTCCTGTGTAAAGAGCCCACCGCCTTTGAGGTTCCTCAGCTTAGTGTTTGTGGAGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035455_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000424=AAA=WD(100=19.2),PF093365=Vps4_C=WD(100=6.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAAAGGCGCGCTTTTC
R:
ACAGGTTGGTAGCAAAGACCTG
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types