RnoEX6043384 @ rn6
Exon Skipping
Gene
ENSRNOG00000004440 | Fignl1
Description
fidgetin-like 1 [Source:RGD Symbol;Acc:1307112]
Coordinates
chr14:91895909-91904433:-
Coord C1 exon
chr14:91904385-91904433
Coord A exon
chr14:91901799-91901914
Coord C2 exon
chr14:91895909-91898635
Length
116 bp
Sequences
Splice sites
3' ss Seq
CATCTTTATGTTCTGTGCAGCTC
3' ss Score
8.39
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTTGGAAGGGCGCGCTTTTCGGTGGCTGCTGTCCCGGCAGGGAGCGCAG
Seq A exon
CTCAACCTGTGCTGATCACATCGGGAAGTATTCAGTACCTGGTAAAGTACATGGTGCTTCACGTGGAACTTGGCCTTGATTTCTGGCATTGGTCATAATCAGCAGAGTTCTCTCTG
Seq C2 exon
TTTTGTCTTGTGTTATAGAGCCTTTGACATGGAGACATCCAGCTCCAGGTCTGTGCAGGTGGATGACTGGCAGAAGAATTACTCTGTGGTTGCATCCAGCATATGTACACCTAAGCAGAAGGCCGATGCATACCGTGCACTGCTACTGCATATTCAGGATGCATATGCCAACTCCGAGATCTCTCAGGTCTTTGCTACCAACCTGTTTAAGAGGTATACAGAGAAATACTCTGCAATTATTGATTCTGACAATGTTGTAACTGGCTTGAATAACTATGCAGAGAGCATTTTTGCTTTGGCAGGATCTCAACAGGCTGACAGTGACAAGTGGCAATCTGGTTTGTCAATAAATAATGTTTTCAAAATGAGTACTGTACAGGAGATGATGCAAGCTGGTCAGAAATTTAAAGAGTCTCTGTTGGAACCTGCTGATGCATCAGTAGTCATGTGTAAAGAGCCTACCATCTTTGAGGTTCCTCAACTTGGTGTTTGTGGAGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004440-'1-1,'1-0,6-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000424=AAA=WD(100=19.3),PF093365=Vps4_C=WD(100=6.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTCGGTGGCTGCTGTCC
R:
AACAGGTTGGTAGCAAAGACCTG
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]