MmuEX0020071 @ mm10
Exon Skipping
Gene
ENSMUSG00000026867 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
Coordinates
chr2:34730463-34754559:-
Coord C1 exon
chr2:34754266-34754559
Coord A exon
chr2:34734551-34734607
Coord C2 exon
chr2:34730463-34730680
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCTCTGCTATCTCAGACT
3' ss Score
6.46
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CACCAGGTACACGGAGACGTGAGGGCGGAGGATCGGCGTACAGGTCCTGGCAAGGCGGTTCGCGACCGGGAGCGGAAGGGCGGCCGTGGTCCGGACCACCGATCCCAGGGGCCCCCGCGGCGCCGCGCACGCGCACTGCTGAGGGGGCAGCGCCGCCGCAGGAGGCAGGGAAACCGACTGGCGATCTGTGGCGGCGGCTGGGCGGCGGTGGCAGTTCGCAGCGAGGGCGACGGCTCCGAGGCCGAGAGGCAGTCCAGCGAGGACCTGGGCGCCGTCCTCCGCATGACCTCACCG
Seq A exon
ACTCTGCAAAGCACTATTCTGTTCTGAGAGGTCAACCTTTTCTGAGTCTACCCAAAG
Seq C2 exon
TGATCAACTTTTGTACCTTTTCCGAATTCAAAGATGGTGAAGCTAGATATTCACACATTGGCCCACCACCTCAAGCAGGAACGCTTATATGTGAGCTCTGAGAAACAGCTCATTCAGAGGCTAAATGCCGATGTACTGAAGACAGCTGAAAAGCTGTATCGAACAGCGTGGATTGCAAAGCAACAGAGGATTAATTTGGATCGTCTTATTATAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026867_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAGTCCAGCGAGGA
R:
TAAGCGTTCCTGCTTGAGGTG
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types