MmuEX0020640 @ mm10
Exon Skipping
Gene
ENSMUSG00000072723 | Gm10044
Description
predicted gene 10044 [Source:MGI Symbol;Acc:MGI:3641749]
Coordinates
chr14:7771141-7788654:-
Coord C1 exon
chr14:7788481-7788654
Coord A exon
chr14:7776511-7776812
Coord C2 exon
chr14:7771141-7771302
Length
302 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTCCACTCCCCTCAGTGA
3' ss Score
8.52
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
GCCTCACAGCATCAGCATGGGGACTGTGTGGCTGCCTTGCTACAACACGGTGCAGATCCCAATGCTGTGGATGCTCTTGGAAACACTGCCCTCCACTATGCAGTACACAGTGAAAACACGTTCATAGCTTCCCAGCTCCTTGAACACAGCGCCAACATTGAAGCCAAAACAAAG
Seq A exon
TGACTGGTAAGGAGGAAGTTGTTTTAAAAACCAGTACTCCAAGACAAAAAGCATCTAAAGCCAGGAAAACAAACCTACCATCCAACCATCTTCAAAAGACATCTCAAGATCAAAAGGAGAAAAAGAAATGTGATGCAGGACATAGACCTGCACATTCAGGATGTGCTCCTACGAAAACAGCAGAGGAAGCCCAGCAAGGGGAACAGCTTAACAAAGTCCTCAGAAACAAATCAAGGGCATTTCCTGAACCCTTTGAGAAAGAGCTACCACCTAGCATCTCTAAAGCAAATGCCCACTTGAAG
Seq C2 exon
GAGAGAACCTGCCACACATTTGATGAAAATGAACAGAAGTGAAAATAAAGGCTATTTTCCGGGAGATTCCATGGCAACGTTTGAGAAGTGTGCTGCAGACACAAGTGCTGAGCCACCAGTGAAGCAGAGCTGTGCTCGCCAACTCCATCAGGACGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072723-'2-8,'2-4,8-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACAGCATCAGCATGGGG
R:
CTTTGTCCGTCCTGATGGAGT
Band lengths:
334-636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types