MmuEX1011172 @ mm10
Exon Skipping
Gene
ENSMUSG00000072723 | Gm10044
Description
predicted gene 10044 [Source:MGI Symbol;Acc:MGI:3641749]
Coordinates
chr14:7776511-7786113:-
Coord C1 exon
chr14:7786007-7786113
Coord A exon
chr14:7783854-7783915
Coord C2 exon
chr14:7776511-7776812
Length
62 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTTGTATGCCACAGTGG
3' ss Score
7.08
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAGGGCTTCACACCACTTTCACTGGCTCTACGGCAAAACAAAGACCTGATTGGGGAACTTTTAATGCAGAAGGGTGCAAATATACACACAGTGTTCCACCCAGACAG
Seq A exon
TGGAGCAATACCCAAGAAACAGCAAAACCAAATATGTAAAAAATCCATGCAGAGCAGTGCAG
Seq C2 exon
TGACTGGTAAGGAGGAAGTTGTTTTAAAAACCAGTACTCCAAGACAAAAAGCATCTAAAGCCAGGAAAACAAACCTACCATCCAACCATCTTCAAAAGACATCTCAAGATCAAAAGGAGAAAAAGAAATGTGATGCAGGACATAGACCTGCACATTCAGGATGTGCTCCTACGAAAACAGCAGAGGAAGCCCAGCAAGGGGAACAGCTTAACAAAGTCCTCAGAAACAAATCAAGGGCATTTCCTGAACCCTTTGAGAAAGAGCTACCACCTAGCATCTCTAAAGCAAATGCCCACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072723-'4-4,'4-3,5-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTTCACTGGCTCTACGGC
R:
TGCTTTTTGTCTTGGAGTACTGGT
Band lengths:
147-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types