MmuEX0020642 @ mm10
Exon Skipping
Gene
ENSMUSG00000059659 | Gm10069
Description
predicted gene 10069 [Source:MGI Symbol;Acc:MGI:3641875]
Coordinates
chr6:128438757-128439696:+
Coord C1 exon
chr6:128438757-128438847
Coord A exon
chr6:128439055-128439387
Coord C2 exon
chr6:128439515-128439696
Length
333 bp
Sequences
Splice sites
3' ss Seq
AGATCCTTCTCTATCCTCAGGAC
3' ss Score
9.21
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
AGGGAGGAGCGGCACGAGCGGGCTGCAAAGGGGCGGGAGCGGAGAACTTTCTAGAGAAGCGGTTAAACGGGTTGAGGCTCTTGGACTGAGG
Seq A exon
GACTCCAAGTGGCGAGCCTCCCAAGTCCGGGCCTGCCTCGTGGCCGGCCCTGCTCACCCAGGCCCACAGCGGAATAGCTGGAGACAGGCAGTCAGATGTGAAGTGGCAAAGATCGGCCTCCCGTGATTGTGCCACAGATGCCCATGGTTCCAGGCGTGGGCACCTGAGCAGTGTGGGAAAGAGAGGTCGAGGGATTGAAAGTGTGGGCCCCGTAGGGACAGTTTCAGCCCAGGTGCACAGATCGGACACAACTTTGCCCTCCCTGCAGCCTGGCAGGCCCACCGCAAAAATGCCATGAGCAGATTTATAAGAGCCATAGACTTGTAAGTGGAG
Seq C2 exon
GTGAATAGGAAGGAAGGTTTTCTCAACCTGCTCGCTGCTCCTATGAGATGCCTGTGGAGTTCTGAGTCTGTGTGGCTAAAACCATGAAGTTCTGATTACCGGAACAGTGCTGGCTTGATGGAAGATCTGTCTGGAGAGGTCCTGACTCTGCCCAGCAGTTTAGTACCCAGTTATACAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059659_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGCGGAGAACTTTCTAG
R:
GGCTGTATAACTGGGTACTAAACTGC
Band lengths:
238-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types