MmuEX0020642 @ mm9
Exon Skipping
Gene
ENSMUSG00000059659 | Gm10069
Description
predicted gene 10069 [Source:MGI Symbol;Acc:MGI:3641875]
Coordinates
chr6:128388775-128389714:+
Coord C1 exon
chr6:128388775-128388865
Coord A exon
chr6:128389073-128389405
Coord C2 exon
chr6:128389533-128389714
Length
333 bp
Sequences
Splice sites
3' ss Seq
AGATCCTTCTCTATCCTCAGGAC
3' ss Score
9.21
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
AGGGAGGAGCGGCACGAGCGGGCTGCAAAGGGGCGGGAGCGGAGAACTTTCTAGAGAAGCGGTTAAACGGGTTGAGGCTCTTGGACTGAGG
Seq A exon
GACTCCAAGTGGCGAGCCTCCCAAGTCCGGGCCTGCCTCGTGGCCGGCCCTGCTCACCCAGGCCCACAGCGGAATAGCTGGAGACAGGCAGTCAGATGTGAAGTGGCAAAGATCGGCCTCCCGTGATTGTGCCACAGATGCCCATGGTTCCAGGCGTGGGCACCTGAGCAGTGTGGGAAAGAGAGGTCGAGGGATTGAAAGTGTGGGCCCCGTAGGGACAGTTTCAGCCCAGGTGCACAGATCGGACACAACTTTGCCCTCCCTGCAGCCTGGCAGGCCCACCGCAAAAATGCCATGAGCAGATTTATAAGAGCCATAGACTTGTAAGTGGAG
Seq C2 exon
GTGAATAGGAAGGAAGGTTTTCTCAACCTGCTCGCTGCTCCTATGAGATGCCTGTGGAGTTCTGAGTCTGTGTGGCTAAAACCATGAAGTTCTGATTACCGGAACAGTGCTGGCTTGATGGAAGATCTGTCTGGAGAGGTCCTGACTCTGCCCAGCAGTTTAGTACCCAGTTATACAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059659_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGCGGAGAACTTTCTAG
R:
GGCTGTATAACTGGGTACTAAACTGC
Band lengths:
238-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: