MmuEX0020643 @ mm10
Exon Skipping
Gene
ENSMUSG00000059659 | Gm10069
Description
predicted gene 10069 [Source:MGI Symbol;Acc:MGI:3641875]
Coordinates
chr6:128439515-128489043:+
Coord C1 exon
chr6:128439515-128439696
Coord A exon
chr6:128472737-128474143
Coord C2 exon
chr6:128488891-128489043
Length
1407 bp
Sequences
Splice sites
3' ss Seq
CTCATTTGTGATACTTCCAGGTC
3' ss Score
7.55
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAATAGGAAGGAAGGTTTTCTCAACCTGCTCGCTGCTCCTATGAGATGCCTGTGGAGTTCTGAGTCTGTGTGGCTAAAACCATGAAGTTCTGATTACCGGAACAGTGCTGGCTTGATGGAAGATCTGTCTGGAGAGGTCCTGACTCTGCCCAGCAGTTTAGTACCCAGTTATACAGCCTG
Seq A exon
GTCCTGGATCGCATACTGTGGAGACAGGGAAGCAAACACAGAGGCCAGTCCAGCTTGTCAGACTCGAGAGAGAATGTCACACCAAAACAGCAGAGGACCTGGTTCCGTCTTGTCTAGATTACATTTCCCCACACTGTGAGATCACCACTGGCAGTTTGGGCTTATTGTTGGGGCCTGTGGGAACATTCTCGATCTTCCTCATCACTAGAAGTCCGTCAATGATTTTTCCAAACACTACATGCTTTCCATCCAGCCAATCACACTTAGAACACGTGATAAAGAACTGGCAGCCATTTGTACTGGGACCACTATTTGCCATGGAAAGCAGGCCTGGAGCAGAGTGTCTAAGTTTAAAATTTTCATCCGCAAATGGACCCCGGTAAATACTGGCGACTCCAGTGCCATCGCCATTAACAAAATCTCCACCCTGAATCATGAAATCCTTTATGACTCTGTGGAAGGTGCTTCCTTTGTATCCTATTGGAACGCCATCTTTTCTGAACTCTCCGGTGCAGAATTGCCTAAAGTTCTCTGCCGTCTTAGGCACCACGACTGCAAAGAGCTCGATCTTCATGCGACCAACTTCCTGGCCGCCAATGCTGACATCGAAGAAGACCACTGGATGGACTGGACTTGAATTTGCCACTGCCATGGCTTTGACCCGGAAATCGGAAGACATACTTTTAATCTGGGCCACACCTTCTGTAGGAAGCCTATATAAGGACAATGGGAGGAGGAAGTTTTAGTCTTTGGCCTGCTTGCCCTAACCTTGCTAGCACATCCCTTTCTGCGCTGGCATTGGAACCTACTTCTTTGGGATTTCAGCAGATACAGGAGATGAGCGGAAACACCCAGGCTCATGGGACTGAGCAACTATTGGATTCTTGGACTTCCCATTCACAGCTAACCATTGTTGGATTAGTTGGACTTGAGTACAGCATCCCAGAAGCAACAACAATATGTCACTCATTTGACACGCAAGTATCTGAGTGATGACCACTGCTGTACTGTCTTCCATGGGGAGTCTACTTCCATTCACCGGGACTAGGTGAGGGAGGGAGGAGAAGGAGGAGTCAAGCAGAGTCCAACCCAGTTCTTAAAGGACTTGACCTAGGAGGAGTCACTATGGGATCTAGCCTCCCTTCTAACCTTATAACTGGGAGTTGGATTTTGAGATATTAGGAAAAAGTAAATAAAATCCATGAAGCAGCCCTACACTCTGTCTGGTCACAGAGCCATTGCTTGTGGAGACAATGGCAGGGGACACTTCATGCCAGTGTCACATCTGAGGAACTCCCGAAGCAGAATGAGACCAGCATCCCTCGCAAGAATAGGAAGAGGCCTAATCTATAGGAACCAAGGGATGAGAAATGAAGACAAAAAAATGTAGACAGAGGTCACATTCAG
Seq C2 exon
GGTCTCTCCACAGACCTGAGTGGAGGAGAAGCCCCCGTGGGAGTTTTGTTGCTTGCTGATCCACTTCACAATCTTGGATGCTGTGGACAGGTCTGATGAAGACAGGTCCCGTGTGGGCCGGGAAGACTCAGAGGTTAGATAGGCGAGAAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059659_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATAGGAAGGAAGGTTTTCTCA
R:
TGCTTCTCGCCTATCTAACCTCT
Band lengths:
334-1741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types