MmuEX1011179 @ mm10
Exon Skipping
Gene
ENSMUSG00000059659 | Gm10069
Description
predicted gene 10069 [Source:MGI Symbol;Acc:MGI:3641875]
Coordinates
chr6:128439515-128446435:+
Coord C1 exon
chr6:128439515-128439696
Coord A exon
chr6:128442785-128442945
Coord C2 exon
chr6:128446254-128446435
Length
161 bp
Sequences
Splice sites
3' ss Seq
GTAATTTTATGTTTTTGAAGAAT
3' ss Score
4.98
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GTGAATAGGAAGGAAGGTTTTCTCAACCTGCTCGCTGCTCCTATGAGATGCCTGTGGAGTTCTGAGTCTGTGTGGCTAAAACCATGAAGTTCTGATTACCGGAACAGTGCTGGCTTGATGGAAGATCTGTCTGGAGAGGTCCTGACTCTGCCCAGCAGTTTAGTACCCAGTTATACAGCCTG
Seq A exon
AATGGCAGCAGCACAGGAAAGAGAGGAACAATTGAAAACAAAAGAAAAGGATTCTTCAGAGAAGAAACAGGCCGGGCAGTGGTGGTGCACACCATTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGACAGCCTGGTCTACAGA
Seq C2 exon
GTGTTAGGCAAATTTCTTACAGTTAGCCCTGCCCTAGGAGCTGAGGCTTTGCTACTTCTTACCGGAAGGGGGCGTGTGAGATCACATGACTTGCTGAAGCCGGGAGATCCTCTTTGGAATCTGGACTTCAGTCAAAGGCTGAAAACCCAGAAGACTAAAGACTCCCCATCTTACCAGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059659-'1-2,'1-1,2-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCGCTGCTCCTATGAGAT
R:
CGGCTTCAGCAAGTCATGTGA
Band lengths:
256-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types