MmuEX0020677 @ mm9
Exon Skipping
Gene
ENSMUSG00000073403 | Gm10499
Description
predicted gene 10499 [Source:MGI Symbol;Acc:MGI:3702919]
Coordinates
chr17:36278703-36279476:-
Coord C1 exon
chr17:36279444-36279476
Coord A exon
chr17:36279277-36279324
Coord C2 exon
chr17:36278703-36278978
Length
48 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTCTTCTACTGCAGGAA
3' ss Score
11.81
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTGGAAAAGGAGGGGACTATGCTCCGGCTGGAG
Seq A exon
GAAGCAAAGGTGGCCAGGGCTCTGACTTGTTTCTGGGGGCCTTCAAAG
Seq C2 exon
CTATCCTTCCTGGTCCTGCAGGCACTAGGGGACATCTGCATCCTGACAGCTCCATGCTGCCCTGAGCTGCAGCTCCTCACTTCCACACTGAGAATAAGAATCTGGAGAGATGGCTCAGCAGTTAAGAGAACTGACTGCTCTTTCAGAGGTCCTGAGTTCATTCCAAGCACTCACATGGTAGCTCACAACCATCTGTAATGGAATCCCATGTACCCTTATAGTATATGTCTGGAGCTAGGTGCAGTATATTTATATAATAAATAAATAAATCTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073403-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.059 C2=0.476
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAGGGGACTATGCTCCG
R:
TGCTGAGCCATCTCTCCAGAT
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: