MmuEX0020762 @ mm9
Exon Skipping
Gene
ENSMUSG00000068869 | Gm12258
Description
predicted gene 12258 [Source:MGI Symbol;Acc:MGI:3651534]
Coordinates
chr11:58660660-58669655:+
Coord C1 exon
chr11:58660660-58660761
Coord A exon
chr11:58667762-58667888
Coord C2 exon
chr11:58669563-58669655
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGAGAAATGTCTCATTACAGGGG
3' ss Score
2.92
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
CATCCTTGTTGCTTCCGGTTTCCGCCGAGGTCCGCCCCTGGCTATTTGGTTCTACGCTGTATTTCGGTGAAAGGCACCGGGAGGCTGACATCTGGCACCGAG
Seq A exon
GGGTTGGTGTCATTTGAGGATGTGTCTGTGGACTTCACCTGGGATGAGTGGCAGGACCTGGATGACAGTCAGAGGAAGCTCTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGCTGTCCTTGA
Seq C2 exon
ATCAGTGTGATGCCAAACCTGAGTTGATCCTGAAGTTGGAGAAAGAAGCTGAGCCATGGAAGGAAGACGATGCCCCAGACCAGAGCCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068869-'0-3,'0-2,3-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTGTTGCTTCCGGTTTCC
R:
CTGGGAGGCTCTGGTCTGG
Band lengths:
194-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: