MmuEX0020762 @ mm10
Exon Skipping
Gene
ENSMUSG00000072915 | Gm12258
Description
predicted gene 12258 [Source:MGI Symbol;Acc:MGI:3651534]
Coordinates
chr11:58848646-58856153:+
Coord C1 exon
chr11:58848646-58848702
Coord A exon
chr11:58854260-58854386
Coord C2 exon
chr11:58856061-58856153
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGAGAAATGTCTCATTACAGGGG
3' ss Score
2.92
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
CTGTGGTTTGATGGTCCTCTCAGATCTGAAAGAGTTAAGACAATGGATACATCTGAG
Seq A exon
GGGTTGGTGTCATTTGAGGATGTGTCTGTGGACTTCACCTGGGATGAGTGGCAGGACCTGGATGACAGTCAGAGGAAGCTCTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGCTGTCCTTGA
Seq C2 exon
ATCAGTGTGATGCCAAACCTGAGTTGATCCTGAAGTTGGAGAAAGAAGCTGAGCCATGGAAGGAAGACGATGCCCCAGACCAGAGCCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072915_MULTIEX1-3/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.594
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENSMUST00000139337fB1807
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTTTGATGGTCCTCTCAG
R:
CTGGGAGGCTCTGGTCTGG
Band lengths:
149-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types