RnoEX0072713 @ rn6
Exon Skipping
Gene
ENSRNOG00000051868 | RGD1561277
Description
RGD1561277 [Source:RGD Symbol;Acc:1561277]
Coordinates
chr10:45170904-45179695:+
Coord C1 exon
chr10:45170904-45170960
Coord A exon
chr10:45176168-45176294
Coord C2 exon
chr10:45179603-45179695
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGAAAGTCTTCTCATTACAGGGC
3' ss Score
3.82
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
TTATGGTTTGATGGTCCTCTCATGTCTAAAGGCGTTAAGACAATGGATATGTCTGAG
Seq A exon
GGCTTGGTGTCATTTGAGGATGTGTCTGTGGACTTCACCTGGGACGAGTGGCAGGACCTGGATGAAGCTCAGAGGAAGCTCTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGATGTCCTTGA
Seq C2 exon
ATCAGTGTGATCCCAAACCTGAGTTGATCCTGAAGTTGGAAAAAGAAGCTGGGCCGTGGAAGGAAGACAATTCTCCAAACCAGAGCGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051868-'2-3,'2-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.594
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTTTGATGGTCCTCTCATGT
R:
GGGACGCTCTGGTTTGGAGAA
Band lengths:
146-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]