MmuEX0020785 @ mm10
Exon Skipping
Gene
ENSMUSG00000087307 | Gm12925
Description
predicted gene 12925 [Source:MGI Symbol;Acc:MGI:3651536]
Coordinates
chr4:123667614-123669277:+
Coord C1 exon
chr4:123667614-123667747
Coord A exon
chr4:123668624-123668715
Coord C2 exon
chr4:123669177-123669277
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTGTTTTGCAGCAG
3' ss Score
9.3
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
AATCTAAGTTGATTGCCAAACCATACAATCCAGAAGCTCTGAGGCTCTCCTGGGCCTGCTGTTGAATTTCTAAGGAGTTTGCCTTGGAAGAATCAGACAGCAGGATGGACTTGGGAGGACACCTAGTGGCAGAG
Seq A exon
CAGTGGCTTCCCTGGAACTCTCAATGTAGACCAGGCTGGCCTGGAACTAACAGAGATCACCTGCCTCTGACTCCTGGATACTGGTATTAAAG
Seq C2 exon
GAATGTTTTGTCTGCATGGATGTATGTGTACAAAATAGTGCCTACAGAAATCCGAAGAGAGCTTTGAATCCCCTGAAACTGGCAATGCAGATGATTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087307-'4-5,'4-4,5-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGCCTGCTGTTGAATTT
R:
TCTGCATTGCCAGTTTCAGGG
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types