MmuEX0020785 @ mm9
Exon Skipping
Gene
ENSMUSG00000087307 | Gm12925
Description
predicted gene 12925 [Source:MGI Symbol;Acc:MGI:3651536]
Coordinates
chr4:123344697-123348453:+
Coord C1 exon
chr4:123344697-123344990
Coord A exon
chr4:123345867-123345958
Coord C2 exon
chr4:123348162-123348453
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTGTTTTGCAGCAG
3' ss Score
9.3
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
TTCTAATGAATGGCAAAGGGGAAGTCCACATGTTTGGCTGATGCTCCTGTTTTATACAGAGAACATTTTACTAGGCTAGAGGGAACAGAGCTTCTTGGAGGGAAGGAAGAAAGGCTAACAAAGTGCAATTTTTGTTTTTGTTTTACTTCTTTCAAGCAAGAATCTAAGTTGATTGCCAAACCATACAATCCAGAAGCTCTGAGGCTCTCCTGGGCCTGCTGTTGAATTTCTAAGGAGTTTGCCTTGGAAGAATCAGACAGCAGGATGGACTTGGGAGGACACCTAGTGGCAGAG
Seq A exon
CAGTGGCTTCCCTGGAACTCTCAATGTAGACCAGGCTGGCCTGGAACTAACAGAGATCACCTGCCTCTGACTCCTGGATACTGGTATTAAAG
Seq C2 exon
AGAACAAGAGGAAGGACCCTCAACAAGAAGCTGTCCCAAAGAAGTGTGGAATGCCTCAGCCACCCAGGCCTGTCTTCACAGAGTGCATAGAAAGGATGTGAAGACACTCGTGAACCATGAAGTGCTACACACATGTTTCTGGTCATTATCTTACTAAGCACTGTAAAGGCAGTAGTTGCCTTAGGCAGAGCTAGAATCCTTCCCAGTTTGGCCCCTTGCTGGCTGAGAGACCTCAGGCGAGGTCCTGAACTCTCCAGGTGTCTGTCTGTTTACTATAGAACATCAGCTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087307_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGCAGGATGGACTTGG
R:
AGCACTTCATGGTTCACGAGT
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: