MmuEX0020931 @ mm9
Exon Skipping
Gene
ENSMUSG00000086868 | Gm15883
Description
predicted gene 15883 [Source:MGI Symbol;Acc:MGI:3801875]
Coordinates
chr7:27909500-27915693:-
Coord C1 exon
chr7:27915626-27915693
Coord A exon
chr7:27914773-27914916
Coord C2 exon
chr7:27909500-27910006
Length
144 bp
Sequences
Splice sites
3' ss Seq
GGAGAATCTTCATCCTACAGCTA
3' ss Score
3.54
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
AGAGGAAGAAGGATTCAGAGGCCAGACAGACAGTCGCATGTGTTGTGGGCAGGGCCAATAGTACTCAG
Seq A exon
CTACCTGTGCCATCTTTGTGAGGAAGCAGTCGATGAAGTCCCGGGGAGAGTTGGGGTCCAGGGAATCCTGGTGTTCGCGGACGCTGCGGGCAATGAGATCTTTCATGCCTCCAAAGTTCCGGAACAAGCGTTTGTGTGGCCCAG
Seq C2 exon
CACCTCCAGCAGGAAGCTGCCTTCTTCCAGGATCCGCTCCTCGATGCTTCTTTTTCCCATGCCAAAGTTCCGCAGGATTTGGACAGAGAACCTTCTGAGGATCTTCCAGCGCTCTCCATCGGAGAAGGCGATGCCTGGGAAGAGGAAAAGGAACGGCAAATCCAACTGGCAACCATTCCCAAATCACAGCCACCGAGTCATCTCTTCCTGCTCCATCAGGAGGGGGATTCTAAACTGACTCCGCAGTTCTTCCAGCAAATCCTTCCCGACTCTTGGGACTGGACCAGGAGCCTGCTTTGGGCTCCACAGGACTCTGGGCTTTCCACTGATCATGCTGACTCTGTATTCCCTTGTAACGACCTGTCACTTTGAGGTGTCAGAAGGCAGAGTAAAGACACATTTTGTGTCAAAATGACCTTTGAATTGTCATCAGACTTTGTTGATTGTTTATTGATTATTGAGTGCACAAATAAGATATGTAAATAAGAAAAATAAATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086868_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGTCGCATGTGTTGTGG
R:
AAGAGATGACTCGGTGGCTGT
Band lengths:
247-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: