MmuEX0020931 @ mm10
Exon Skipping
Gene
ENSMUSG00000086868 | Gm15883
Description
predicted gene 15883 [Source:MGI Symbol;Acc:MGI:3801875]
Coordinates
chr7:27124481-27130674:-
Coord C1 exon
chr7:27130607-27130674
Coord A exon
chr7:27129754-27129897
Coord C2 exon
chr7:27124481-27124987
Length
144 bp
Sequences
Splice sites
3' ss Seq
GGAGAATCTTCATCCTACAGCTA
3' ss Score
3.54
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
AGAGGAAGAAGGATTCAGAGGCCAGACAGACAGTCGCATGTGTTGTGGGCAGGGCCAATAGTACTCAG
Seq A exon
CTACCTGTGCCATCTTTGTGAGGAAGCAGTCGATGAAGTCCCGGGGAGAGTTGGGGTCCAGGGAATCCTGGTGTTCGCGGACGCTGCGGGCAATGAGATCTTTCATGCCTCCAAAGTTCCGGAACAAGCGTTTGTGTGGCCCAG
Seq C2 exon
CACCTCCAGCAGGAAGCTGCCTTCTTCCAGGATCCGCTCCTCGATGCTTCTTTTTCCCATGCCAAAGTTCCGCAGGATTTGGACAGAGAACCTTCTGAGGATCTTCCAGCGCTCTCCATCGGAGAAGGCGATGCCTGGGAAGAGGAAAAGGAACGGCAAATCCAACTGGCAACCATTCCCAAATCACAGCCACCGAGTCATCTCTTCCTGCTCCATCAGGAGGGGGATTCTAAACTGACTCCGCAGTTCTTCCAGCAAATCCTTCCCGACTCTTGGGACTGGACCAGGAGCCTGCTTTGGGCTCCACAGGACTCTGGGCTTTCCACTGATCATGCTGACTCTGTATTCCCTTGTAACGACCTGTCACTTTGAGGTGTCAGAAGGCAGAGTAAAGACACATTTTGTGTCAAAATGACCTTTGAATTGTCATCAGACTTTGTTGATTGTTTATTGATTATTGAGTGCACAAATAAGATATGTAAATAAGAAAAATAAATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086868_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGTCGCATGTGTTGTGG
R:
AAGAGATGACTCGGTGGCTGT
Band lengths:
247-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types