MmuINT0045024 @ mm10
Intron Retention
Gene
ENSMUSG00000052974 | Cyp2f2
Description
cytochrome P450, family 2, subfamily f, polypeptide 2 [Source:MGI Symbol;Acc:MGI:88608]
Coordinates
chr7:27129191-27129893:+
Coord C1 exon
chr7:27129191-27129351
Coord A exon
chr7:27129352-27129716
Coord C2 exon
chr7:27129717-27129893
Length
365 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TCTCCAACTCTGGTCCCCAGATG
3' ss Score
8.03
Exon sequences
Seq C1 exon
GCAAGCCCTTTGACCCCGTGTTTATCCTGAGCCGCTCTGTGTCCAACATTATCTGCTCTGTCGTCTTCGGAAGTCGCTTCGACTATGACGATGAGCGTCTGCTCACCATCATCCACTTTATCAATGACAACTTCAAGATTATGAGCAGCCCTTGGGGCGAG
Seq A exon
GTAAGCACTCGGAGGTCAACCAGATGGGATCATGGGTCCACAGGGTCCAAAAATGTACCAGGGGCCAGTGATGAGATACATGCCTATAAACCCCATACTAAGGAGGCCGAGGGGAGAGGATTGCCACAAGTTCCTGACCAAGCTAGACAAAATAGAAAGAACTCCTCCTTAAAACCCCACCCCCAGTTACACGGTCCACCCATCCTCCTCTGTCCTGCCCCCCTCCCTCCCACTCTCGTTCCACCCTTGCAGAACTTGGCTGCCCATGACAAGACCAGGTCAGAGTTGATTTAAGTTTGCTTTGCTTAGCCTATCCATCAACCCCCAAGCTTGCTTCACGAAGCCTCTCCAACTCTGGTCCCCAG
Seq C2 exon
ATGTACAACATCTTCCCAAGTGTCCTTGATTGGATACCTGGGCCACACAAACGCTTGTTCCGGAACTTTGGAGGCATGAAAGATCTCATTGCCCGCAGCGTCCGCGAACACCAGGATTCCCTGGACCCCAACTCTCCCCGGGACTTCATCGACTGCTTCCTCACAAAGATGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052974:ENSMUST00000003100:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(38.1=100),PF0006717=p450=PU(1.4=1.9)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTTTGACCCCGTGTTTA
R:
TGTGCCATCTTTGTGAGGAAGC
Band lengths:
334-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types