RnoINT0044373 @ rn6
Intron Retention
Gene
ENSRNOG00000032805 | Cyp2f4
Description
cytochrome P450, family 2, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:2476]
Coordinates
chr1:83942494-83943291:+
Coord C1 exon
chr1:83942494-83942654
Coord A exon
chr1:83942655-83943114
Coord C2 exon
chr1:83943115-83943291
Length
460 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CCTTCAACTCTGGTCCCCAGATG
3' ss Score
8.22
Exon sequences
Seq C1 exon
GCAAGCCCTTTGACCCCGTGTTTATCCTGAGCCGCTCGGTCTCCAACATTATTTGCTCTGTCATCTTCGGCAGTCGTTTCGATTATGACGATGAACGGCTGCTCACCATTATCCACTTTATCAATGACAACTTCCAGATTATGAGCAGCCCCTGGGGCGAG
Seq A exon
GTAAGCACTCTGAGGTCAACCAGATGGGGTAGTGGGCCCACCAGCTCCTAAAAAGCACCAGGGGCCGGAATCCCCATACTAAGGAGACCGAGGCTAGAGGACTGCCACAAGTTCCTGACCAACCTAGACTACATAGAAACAATTCCTCCAGCCGGGACTGAAGAACCAGGTTATGTCTCAGAAAAATAAATTCATAAAACCAACAGAGATCTAGCCGGCCTGACCTGCCCCCACTCCTTACCTTATAACCCCACCCCCAGTCACAGGGTTCACCGATCCTCCTCTGTCCTCCCCACCGCCCCCACCCCCAACCCCCCGCCCCCACGCCTGCCCCTTCCTCTTGGCTGAGGAACTTGGCTGCCCCTGCCAAGACCGGGTCAAGGTCAATTTAATGTTTGCCTCGTGTAGTCCATCAACCCCCCAGCTTGCTTTATGAAGCCCCTTCAACTCTGGTCCCCAG
Seq C2 exon
ATGTACAACATCTTCCCGAGTCTCCTGGACTGGGTGCCTGGGCCGCACAGACGCGTGTTCCGGAACTTTGGGGGCATGAAAGATCTCATCGCCCGCAGCGTCCGCGAGCACCAGGACTCCCTGGACCCCAACTCTCCCCGGGACTTCATCGACTGCTTCCTCACAAAAATGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032805:ENSRNOT00000068690:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTTGACCCCGTGTTTAT
R:
CTGTACCATTTTTGTGAGGAAGCA
Band lengths:
334-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]