GgaINT0040495 @ galGal4
Intron Retention
Gene
ENSGALG00000005795 | CYP2H1
Description
cytochrome P450 2H1 precursor [Source:RefSeq peptide;Acc:NP_001001616]
Coordinates
chr6:17133689-17134317:-
Coord C1 exon
chr6:17134157-17134317
Coord A exon
chr6:17133866-17134156
Coord C2 exon
chr6:17133689-17133865
Length
291 bp
Sequences
Splice sites
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
3' ss Seq
CCTTCCTTTTATTTTTACAGCTC
3' ss Score
11.21
Exon sequences
Seq C1 exon
AGGAACCTTTCAACCCTGGGAAGTTCTTAATCCATGCTGTTGCCAACATCATCTGCTCCATTGTATTTGGGGATCGGTTTGACTACGAGGACAAGAAATTTCTGGATTTAATTGAGATGCTGGAAGAAAATAACAAATACCAGAACAGAATGCAAACACTG
Seq A exon
GTTTGTGCAGTTTCATTGCATTAATAAATGTATTAATTGTTAAGGTTACTAAAATTATATTCATTCATGTTACTCATTTATCGCTGGTATGATTTTTCATTTTATCGACATCTAGTTGTATGTCCAAAGCAGAACAGAATTGCTAAAGCAGTTCAAGTAAAGTCTCTTCTCGAGTATAGCGAAACCATGATGCAAAAGAGAGTTTTCTCCTTTTTGTAGTAAGAGTTAGGGGAACAATTTATTGCAAGCACTTTAACCAAAACATGCTTTCCCTTCCTTTTATTTTTACAG
Seq C2 exon
CTCTACAATTTCTTCCCAACCATCTTAGATTCTTTGCCTGGGCCTCATAAAACACTAATAAAAAACACTGAAACCGTTGATGACTTCATTAAAGAAATCGTAATAGCACACCAGGAATCCTTCGATGCCAGCTGCCCTCGAGATTTTATTGATGCTTTCATTAACAAAATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005795:ENSGALT00000040063:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACCTTTCAACCCTGGGA
R:
CTGGCATCGAAGGATTCCTGG
Band lengths:
292-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]