MmuEX0020932 @ mm10
Exon Skipping
Gene
ENSMUSG00000086868 | Gm15883
Description
predicted gene 15883 [Source:MGI Symbol;Acc:MGI:3801875]
Coordinates
chr7:27124481-27129897:-
Coord C1 exon
chr7:27129754-27129897
Coord A exon
chr7:27125469-27126439
Coord C2 exon
chr7:27124481-27124987
Length
971 bp
Sequences
Splice sites
3' ss Seq
GATTTTCTTTTCTTGTTCAGGAA
3' ss Score
10.2
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CTACCTGTGCCATCTTTGTGAGGAAGCAGTCGATGAAGTCCCGGGGAGAGTTGGGGTCCAGGGAATCCTGGTGTTCGCGGACGCTGCGGGCAATGAGATCTTTCATGCCTCCAAAGTTCCGGAACAAGCGTTTGTGTGGCCCAG
Seq A exon
GAACTTGATGTACTGTGAAGACTGGCCATGAACTCATGATCCTCTTGTCTCAACCTTCTGAGTGCTAATGAATTTTTTAGAGAGATGAGCATACCCAAGGGTCTTGGAACTGTAGAAAACTGTGATTTTGTAGAAAACTGTGATTTTGTTTGAACTTTGTATTGCTGACATAGAACTGAGGTCTTATGCACACTAGGCAAGAACTTTGCCACTGAGCCACACCCCCAGCCCCTCACTGGAGGATTCTAGCCAGGGGCTCTACCACTGAGCCACACCCCAGCCCCTCACTGGGGGATTCTAGGCAGGGGCTCTCCCACTGAGCCACACCCCCAGCCCCTCACTGGGGGATTCTAGGCAGAGGCTCTACTATTGAACTATGCCCCCAACCACCTCCTGTGGGATTCTAGGAAGGTGTTCTACCTTCTTAATTATAAATCCCATAAGAAATAAAATGATCAACCCCCAAAGATATTTAGTTTTAATTATGTGTGTGCACATACATGTGTGTGGATGCCCGGAGGCCAGAGGGTGTTGGATCCTCTGAAGGTGGAGTTATAGGAAGTTGTGAACTACGACGTGAGTTCTGGGAACTGAACTGAAATCCTCTGCAGGAGCAAGAAGTGCTCTTAATCACAGAGCCATCTCTCTAGTCCTCTTTCCCCTCGCCCCCTGACATTTTTTATTTTTGAAACAAGGCCTCATGTAGCATAGGCTGGTGAAGGTGGAGTTATAGGAAGTTGTGAACTACGACGTGAGTTCTGGGAACTGAACTGAAATCCTCTGCAGGAGCAAGAAGTGCTCTTAATCACAGAGCCATCTCTCTAGTCCTCTTTCCCCTCGCCCCCTGACATTTTTTATTTTTGAAACAAGGCCTCATGTAGCATAGGCTGGTTTCAAACTCACTATTTATCCAAGAATGATCTTGAAGTCTTGGCCCTCCTGCCTCCACCTCCTGAATTCTGGAATTACAG
Seq C2 exon
CACCTCCAGCAGGAAGCTGCCTTCTTCCAGGATCCGCTCCTCGATGCTTCTTTTTCCCATGCCAAAGTTCCGCAGGATTTGGACAGAGAACCTTCTGAGGATCTTCCAGCGCTCTCCATCGGAGAAGGCGATGCCTGGGAAGAGGAAAAGGAACGGCAAATCCAACTGGCAACCATTCCCAAATCACAGCCACCGAGTCATCTCTTCCTGCTCCATCAGGAGGGGGATTCTAAACTGACTCCGCAGTTCTTCCAGCAAATCCTTCCCGACTCTTGGGACTGGACCAGGAGCCTGCTTTGGGCTCCACAGGACTCTGGGCTTTCCACTGATCATGCTGACTCTGTATTCCCTTGTAACGACCTGTCACTTTGAGGTGTCAGAAGGCAGAGTAAAGACACATTTTGTGTCAAAATGACCTTTGAATTGTCATCAGACTTTGTTGATTGTTTATTGATTATTGAGTGCACAAATAAGATATGTAAATAAGAAAAATAAATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086868_MULTIEX1-2/2=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTGGGGTCCAGGGAATC
R:
TTTGCTGGAAGAACTGCGGAG
Band lengths:
357-1328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types