MmuEX0021212 @ mm9
Exon Skipping
Gene
ENSMUSG00000073402 | Gm8909
Description
predicted gene 8909 [Source:MGI Symbol;Acc:MGI:3704134]
Coordinates
chr17:36301922-36302417:-
Coord C1 exon
chr17:36302301-36302417
Coord A exon
chr17:36302090-36302122
Coord C2 exon
chr17:36301922-36301967
Length
33 bp
Sequences
Splice sites
3' ss Seq
CACAGCTTTTCTTCTCACAGGTG
3' ss Score
9.69
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGCCTCGTCCATCCAGGGACTCCAACATGGTAATCATAGCTGTTCTGGTTGTCCTTGGAGTTGTGATCATCATTGGAGCTATGGTGCCTTTTGTGTTGAAGAGCAGGAGAAAAATAG
Seq A exon
GTGGAAAAGAAGAGAACTATGCTCTGGCTGGAG
Seq C2 exon
GCAGCAACAGTGTCCAGGGCTCTGCCTTGTTTCTGGAGGCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073402-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063056=DUF1049=PU(83.8=77.5),PF066236=MHC_I_C=PU(3.8=2.5)
A:
PF063056=DUF1049=PD(13.5=41.7),PF066236=MHC_I_C=FE(42.3=100)
C2:
PF066236=MHC_I_C=PD(50.0=81.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTTCTGGTTGTCCTTGG
R:
CCTCCAGAAACAAGGCAGAGC
Band lengths:
119-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: