MmuEX0022276 @ mm9
Exon Skipping
Gene
ENSMUSG00000024448 | H2-M10.1
Description
histocompatibility 2, M region locus 10.1 [Source:MGI Symbol;Acc:MGI:1276522]
Coordinates
chr17:36461188-36462782:-
Coord C1 exon
chr17:36462513-36462782
Coord A exon
chr17:36462000-36462275
Coord C2 exon
chr17:36461188-36461463
Length
276 bp
Sequences
Splice sites
3' ss Seq
GCTGAATGGGGGTGGGGCAGGTT
3' ss Score
-1.04
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATCACACTGGCTGCAGACTTTCAACATTGTAATTTTGGAGCCTGGCATGTTGGAGCCCCGGTTCATCCAGGTCAGCTATGTAGACTCCATACAGTATCAGGGATTTGACAGCAAAGACCCATCTGCAGGGATGCAACCTCGAGCTGCATGGATAGAGCTGGAGCCACCTGAATATTGGGAAAAGGAGACATCAAGAGTTCTGGAATTGTCACAGGTAGAGAGACAAGTTCTTCGGTTAATGGTGAAAAAAAATGGACACAAAATGGATG
Seq A exon
GTTATCACACCCTGCAGGAAGTATATGGCTGCAATGTGGCTAATGATGGGAGCTTCCTCGGCGGTCACTACCGACTCACCTACTATGGCTATGATTACTTAACCCTAAATGAGGACCTGAGCTCTTGGACTGCAGAGGGCAAGGGAGCTCAACACGCGAAGAGCAGGTGGGAGGATGCAGGTGAAGCAAAACGGAGGAAGACTTACCTGCAAGGGGAGTGTGTACAAAGGCTTCTTAGATACCTGGACCTTGGAAAGGAGACCTTGCTGTGCTCTG
Seq C2 exon
ATGCCCCCCAAACACATGTGACCCACCATGTAAGACCTGAAGGGAATGTCACCCTGAGGTGCTGGGCCTTGGGCTTCTACCCAGCTGACATCACCATGACCTGGAAGAGGGATGGGAACAACCTCACCCAGGACATGGAGCTGCCAGACACCAGGCCTGCAGGGGATGGAACTTTCCAGAAGTGGGCAGCTGTGGTGGTTCCCTCTGGAGAAGAGCTAAGATACACATGTCATGTGCACCATGAAGGGTTACCTGAGCCTCTCACTCTAAAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024448-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.065 C2=0.129
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(50.3=98.9)
A:
PF0012913=MHC_I=PD(49.2=94.6)
C2:
PF0765410=C1-set=WD(100=89.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGAGCTGGAGCCACCTGA
R:
GAAAGTTCCATCCCCTGCAGG
Band lengths:
295-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: