MmuEX0022279 @ mm10
Exon Skipping
Gene
ENSMUSG00000016206 | H2-M3
Description
histocompatibility 2, M region locus 3 [Source:MGI Symbol;Acc:MGI:95915]
Coordinates
chr17:37270522-37272544:+
Coord C1 exon
chr17:37270522-37270791
Coord A exon
chr17:37270998-37271273
Coord C2 exon
chr17:37272269-37272544
Length
276 bp
Sequences
Splice sites
3' ss Seq
GACACCCTGTTTGTGGCTAGGCT
3' ss Score
5.89
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCTCACATTCACTGCGCTATTTCCACACTGCGGTGTCACGGCCGGGCCGTGGGGAGCCCCAGTATATCTCTGTGGGCTATGTTGACGACGTGCAGTTTCAGCGCTGTGATAGCATTGAGGAAATTCCGAGGATGGAACCTCGTGCACCTTGGATGGAGAAGGAAAGACCAGAGTACTGGAAGGAGCTGAAACTCAAGGTCAAGAATATTGCACAAAGTGCCAGAGCAAACCTTCGGACCCTGCTCCGCTACTACAACCAGAGTGAAGGCG
Seq A exon
GCTCTCACATCCTGCAGTGGATGGTTTCCTGTGAGGTAGGGCCAGACATGCGCCTTCTTGGAGCCCACTATCAGGCTGCGTATGATGGCTCAGATTACATCACCCTGAATGAAGACCTGAGCTCCTGGACTGCAGTGGACATGGTGTCTCAGATCACGAAGAGCCGTTTAGAGTCAGCTGGCACAGCAGAGTACTTCAGGGCCTATGTGGAGGGAGAGTGCCTGGAGCTGCTCCACAGATTCCTGCGGAATGGCAAGGAGATTCTTCAGCGAGCAG
Seq C2 exon
ATCCCCCAAAGGCACATGTGGCCCATCACCCGAGACCCAAAGGTGATGTTACCTTGAGGTGCTGGGCTCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGAAGGATGAAGAGGACCTGACCCAGGACATGGAGCTTGTGGAAACGAGGCCTTCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACATGTTATGTGCACCATGAGGGGCTAACCGAGCCCCTTGCCCTGAAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016206-'1-9,'1-4,2-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.033 A=0.011 C2=0.194
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(50.3=98.9)
A:
PF0012913=MHC_I=PD(49.2=94.6)
C2:
PF0765410=C1-set=WD(100=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCACCTTGGATGGAGAAG
R:
CTGAAGGCCTCGTTTCCACAA
Band lengths:
292-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types