MmuEX0022279 @ mm9
Exon Skipping
Gene
ENSMUSG00000016206 | H2-M3
Description
histocompatibility 2, M region locus 3 [Source:MGI Symbol;Acc:MGI:95915]
Coordinates
chr17:37407179-37410696:+
Coord C1 exon
chr17:37407179-37407279
Coord A exon
chr17:37407943-37408218
Coord C2 exon
chr17:37410664-37410696
Length
276 bp
Sequences
Splice sites
3' ss Seq
GACACCCTGTTTGTGGCTAGGCT
3' ss Score
5.89
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAATCTAATCAGGGCTACCACGGGAAGGATGGGGTCCTCAAGCAACCGCGCTCTCCTGCACATGGTGGTGGTCTCTTTGGCTGTTACCCAAACAGGTTCTG
Seq A exon
GCTCTCACATCCTGCAGTGGATGGTTTCCTGTGAGGTAGGGCCAGACATGCGCCTTCTTGGAGCCCACTATCAGGCTGCGTATGATGGCTCAGATTACATCACCCTGAATGAAGACCTGAGCTCCTGGACTGCAGTGGACATGGTGTCTCAGATCACGAAGAGCCGTTTAGAGTCAGCTGGCACAGCAGAGTACTTCAGGGCCTATGTGGAGGGAGAGTGCCTGGAGCTGCTCCACAGATTCCTGCGGAATGGCAAGGAGATTCTTCAGCGAGCAG
Seq C2 exon
GGGAAAGATGAATCAGTTATACTCAGACTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016206_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF0012913=MHC_I=PD(49.2=94.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTAATCAGGGCTACCACGGG
R:
TGGCAGTCTGAGTATAACTGATTCA
Band lengths:
132-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types