MmuEX0022281 @ mm9
Exon Skipping
Gene
ENSMUSG00000016206 | H2-M3
Description
histocompatibility 2, M region locus 3 [Source:MGI Symbol;Acc:MGI:95915]
Coordinates
chr17:37407179-37410696:+
Coord C1 exon
chr17:37407179-37407279
Coord A exon
chr17:37409593-37409697
Coord C2 exon
chr17:37410664-37410696
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACCCTCCACTCCTTTCCCAGGAA
3' ss Score
9.95
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAATCTAATCAGGGCTACCACGGGAAGGATGGGGTCCTCAAGCAACCGCGCTCTCCTGCACATGGTGGTGGTCTCTTTGGCTGTTACCCAAACAGGTTCTG
Seq A exon
GAAGATCGTCTCAATCATCTGTCGTCATCATGGTCATCGTTGCTAGTCTGGTTCTCCTGGGAGGTGTGATCACTATTGTTGTGGTGTGCAAGAGGAGGGGTGCAG
Seq C2 exon
GGGAAAGATGAATCAGTTATACTCAGACTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016206_MULTIEX1-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATCAGGGCTACCACGGGA
R:
TGGCAGTCTGAGTATAACTGATTCA
Band lengths:
130-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: