MmuEX0022281 @ mm10
Exon Skipping
Gene
ENSMUSG00000016206 | H2-M3
Description
histocompatibility 2, M region locus 3 [Source:MGI Symbol;Acc:MGI:95915]
Coordinates
chr17:37272269-37273751:+
Coord C1 exon
chr17:37272269-37272544
Coord A exon
chr17:37272652-37272752
Coord C2 exon
chr17:37273719-37273751
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCCACTCCTTTCCCAGGAAGATC
3' ss Score
0.19
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATCCCCCAAAGGCACATGTGGCCCATCACCCGAGACCCAAAGGTGATGTTACCTTGAGGTGCTGGGCTCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGAAGGATGAAGAGGACCTGACCCAGGACATGGAGCTTGTGGAAACGAGGCCTTCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACATGTTATGTGCACCATGAGGGGCTAACCGAGCCCCTTGCCCTGAAATGGG
Seq A exon
ATCGTCTCAATCATCTGTCGTCATCATGGTCATCGTTGCTAGTCTGGTTCTCCTGGGAGGTGTGATCACTATTGTTGTGGTGTGCAAGAGGAGGGGTGCAG
Seq C2 exon
GGGAAAGATGAATCAGTTATACTCAGACTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016206-'3-13,'3-12,4-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=90.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTCTGGGCTTCTACC
R:
TGGCAGTCTGAGTATAACTGATTCA
Band lengths:
248-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types