MmuEX0022288 @ mm9
Exon Skipping
Gene
ENSMUSG00000079507 | H2-Q2
Description
histocompatibility 2, Q region locus 1 [Source:MGI Symbol;Acc:MGI:95928]
Coordinates
chr17:35460412-35462044:+
Coord C1 exon
chr17:35460412-35460546
Coord A exon
chr17:35460725-35460757
Coord C2 exon
chr17:35461127-35462044
Length
33 bp
Sequences
Splice sites
3' ss Seq
CACAGCTTTTCTTCTCACAGGTG
3' ss Score
9.69
5' ss Seq
CAAGTTAGT
5' ss Score
4.22
Exon sequences
Seq C1 exon
AGCCTCCTCCATACACTGTTTCCAACATGGTAATCATAGCTGTTCTGGTTGTCCTTGGAGCTGTGATAGTCATTGGAGCTGTGGTCATCATTGGAGTTATGGTGTCTTTTGTGATGAAGAGGAGGAGAAACAAAG
Seq A exon
GTGGACAAGGAGAGGACTGTGCTCTGGCTCCAA
Seq C2 exon
CATGAAGACAGCTGCCTGGAGTAGACTGAGTGATAGCCAGTGTGTTCAGGTCTCTCCTGTGACATCAAGAGTCTTTAGACATCAGCTTTCTTTAGAAAATGGTGTCTCATGTTCTCTGCCACACCAACCCCAGTAGCAGCCATGTGACAAGTTGCACAGACTGAGGTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCAGAGTATTATATTGAGTCTTAGTTCTCATGGCAATTGATTTATTTTGTTTTCTCTTATTCCTTTTCTTATTTACATGTTCCTCGTAACCTAGGCTAAGATCTCATGTGAAAGTAATGGGTTAGAAACCATCCCTAGAATTGGGGTCACTAACATGACCTTATCTGGGGAAACCAACGCTTTACTTTAGAAATTATTTACAAAATTATATAATAGTATTACACAGATAAAAACTTTTCCAACAATAAAATTTCATGTGGCTACATGTGTGTTATCGGAGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079507_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.583 C2=0.000
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=PU(6.9=4.3)
A:
PF066236=MHC_I_C=FE(37.9=100)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTGTCCTTGGAGCTGTG
R:
CTCCAGGCAGCTGTCTTCATG
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: