MmuEX0022289 @ mm9
Exon Skipping
Gene
ENSMUSG00000079507 | H2-Q2
Description
histocompatibility 2, Q region locus 1 [Source:MGI Symbol;Acc:MGI:95928]
Coordinates
chr17:35460412-35462044:+
Coord C1 exon
chr17:35460412-35460546
Coord A exon
chr17:35460946-35460993
Coord C2 exon
chr17:35461127-35462044
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTATTTTACCCTAGGCA
3' ss Score
9.54
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
AGCCTCCTCCATACACTGTTTCCAACATGGTAATCATAGCTGTTCTGGTTGTCCTTGGAGCTGTGATAGTCATTGGAGCTGTGGTCATCATTGGAGTTATGGTGTCTTTTGTGATGAAGAGGAGGAGAAACAAAG
Seq A exon
GCAGGGACAGCGCCCAGAGCTCTGATATCTCTCTCCTAGATTGTAAAG
Seq C2 exon
CATGAAGACAGCTGCCTGGAGTAGACTGAGTGATAGCCAGTGTGTTCAGGTCTCTCCTGTGACATCAAGAGTCTTTAGACATCAGCTTTCTTTAGAAAATGGTGTCTCATGTTCTCTGCCACACCAACCCCAGTAGCAGCCATGTGACAAGTTGCACAGACTGAGGTATACTTCAAAAGAAGGAGGCCTCCTGGAACCAGTTGTGGAACTCTTGGCCAGAGTATTATATTGAGTCTTAGTTCTCATGGCAATTGATTTATTTTGTTTTCTCTTATTCCTTTTCTTATTTACATGTTCCTCGTAACCTAGGCTAAGATCTCATGTGAAAGTAATGGGTTAGAAACCATCCCTAGAATTGGGGTCACTAACATGACCTTATCTGGGGAAACCAACGCTTTACTTTAGAAATTATTTACAAAATTATATAATAGTATTACACAGATAAAAACTTTTCCAACAATAAAATTTCATGTGGCTACATGTGTGTTATCGGAGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079507_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=PU(6.9=4.3)
A:
PF066236=MHC_I_C=PD(51.7=88.2)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTGTCCTTGGAGCTGTG
R:
AGAGACCTGAACACACTGGCT
Band lengths:
146-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: