MmuEX0022298 @ mm9
Exon Skipping
Gene
ENSMUSG00000056116 | H2-T22
Description
histocompatibility 2, T region locus 22 [Source:MGI Symbol;Acc:MGI:95956]
Coordinates
chr17:36175354-36176168:-
Coord C1 exon
chr17:36176122-36176168
Coord A exon
chr17:36175930-36175999
Coord C2 exon
chr17:36175354-36175721
Length
70 bp
Sequences
Splice sites
3' ss Seq
ACCTGTTCTTACTCCTATAGGAG
3' ss Score
10.06
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGTGGATGATGAG
Seq A exon
GAGATGGGGGTTTGCTTTTGGAAGATTAAGTCCTGTAAAACTTGTCTAGGCCACTCCCCAGGAACTTCAG
Seq C2 exon
TTGGCGAGTCTTTACTGTCACCTTGACTGGATTTAGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGGGCTGTGAGGACAGCAGGCCAGTTCTTGCCACCCTGGACAGAAACACATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCATTTTGTCACCTTGTCAAGGGTCCCAGGGACACAAAGCTCCCTCCTCTCACCCACAGCACTCTGGGTCCTACCCTCAGTGCTTCAGGGACATTTAATCAGGTCAAATTGGGATCAATGGCTTTGATGCAGAAAAGAACTGTGGACTAATAGAGATAGGGTTTAATTAAAAAATATATCTTTTTAATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056116_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=0.000 C2=0.300
Domain overlap (PFAM):
C1:
PF0145612=Mucin=FE(27.8=100)
A:
PF0145612=Mucin=PD(1.9=4.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAAGACTCTAGCAAGACT
R:
TCCTTGAGCCAGAAAGGTGAGA
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: