MmuEX0022298 @ mm10
Exon Skipping
Gene
ENSMUSG00000056116 | H2-T22
Description
histocompatibility 2, T region locus 22 [Source:MGI Symbol;Acc:MGI:95956]
Coordinates
chr17:36038407-36039223:-
Coord C1 exon
chr17:36039177-36039223
Coord A exon
chr17:36038985-36039005
Coord C2 exon
chr17:36038407-36038776
Length
21 bp
Sequences
Splice sites
3' ss Seq
GTCCTGTAAAACTTGTCTAGGCC
3' ss Score
4.71
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGTGGATGATGAG
Seq A exon
GCCACTCCCCAGGAACTTCAG
Seq C2 exon
TTGGCGAGTCTTTACTGTCACCTTGACTGGATTTAGGATCATCTGGGAGATGCCCCTTTGAGTGGCTGGGCTGTGAGGACAGCAGGCCAGTTCTTGCCACCCTGGACAGAAACACATCTCACCTTTCTGGCTCAAGGATCTGAACACCTGTCTCTTGCCTACTCGGCTTCTAGTCAGGCATTTTGTCACCTTGTCAAGGGTCCCAGGGACACAAAGCTCCCTCCTCTCACCCACAGCACTCTGGGTCCTACCCTCAGTGCTTCAGGGACATTTAATCAGGTCAAATTGGGATCAATGGCTTTGATGCAGAAAAGAACTGTGGACTAATAGAGATAGGGTTTAATTAAAAAATATATCTTTTTAATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056116-'11-29,'11-28,12-29
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.646 A=0.000 C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAAGACTCTAGCAAGACT
R:
CACAGCCCAGCCACTCAAAG
Band lengths:
112-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types