MmuEX0022299 @ mm9
Exon Skipping
Gene
ENSMUSG00000056116 | H2-T22
Description
histocompatibility 2, T region locus 22 [Source:MGI Symbol;Acc:MGI:95956]
Coordinates
chr17:36176287-36177698:-
Coord C1 exon
chr17:36177423-36177698
Coord A exon
chr17:36177170-36177274
Coord C2 exon
chr17:36176287-36176319
Length
105 bp
Sequences
Splice sites
3' ss Seq
CACTTCCCTTTGCTTCCCAGAGC
3' ss Score
8.28
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACCCTCCAAAGGCACATGTGACCCGTCACCCCAGACCTGAAGGTGATGTCACCCTGAGGTGTTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTCTTGGGAAAGAGCAGAGTTACACATGCCATGTGTACCATGAGGGGCTGCCTGAGCCCCTCATCCTGAGATGGG
Seq A exon
AGCCTGCATGGTACCAAAAGCCTTGGATTTGGATTGTTGCCATGGTTTTCATTTTGTTCATCATTTGTCTCTGTGTGGTTTGCATATGCATGAAGAAGAATGCAG
Seq C2 exon
GTGGGAGAGGAAGGCGTGACACCCAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056116_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.220 A=0.000 C2=0.833
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=89.2),PF135201=AA_permease_2=PU(12.0=6.5)
A:
PF135201=AA_permease_2=FE(70.0=100),PF0145612=Mucin=PU(46.3=69.4)
C2:
PF135201=AA_permease_2=PD(16.0=66.7),PF0145612=Mucin=FE(20.4=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGTGTTGGGCCCT
R:
CTTCTTGGGTGTCACGCCTTC
Band lengths:
254-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types