MmuEX0022299 @ mm10
Exon Skipping
Gene
ENSMUSG00000056116 | H2-T22
Description
histocompatibility 2, T region locus 22 [Source:MGI Symbol;Acc:MGI:95956]
Coordinates
chr17:36039342-36040753:-
Coord C1 exon
chr17:36040478-36040753
Coord A exon
chr17:36040225-36040329
Coord C2 exon
chr17:36039342-36039374
Length
105 bp
Sequences
Splice sites
3' ss Seq
CACTTCCCTTTGCTTCCCAGAGC
3' ss Score
8.28
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACCCTCCAAAGGCACATGTGACCCGTCACCCCAGACCTGAAGGTGATGTCACCCTGAGGTGTTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTCTTGGGAAAGAGCAGAGTTACACATGCCATGTGTACCATGAGGGGCTGCCTGAGCCCCTCATCCTGAGATGGG
Seq A exon
AGCCTGCATGGTACCAAAAGCCTTGGATTTGGATTGTTGCCATGGTTTTCATTTTGTTCATCATTTGTCTCTGTGTGGTTTGCATATGCATGAAGAAGAATGCAG
Seq C2 exon
GTGGGAGAGGAAGGCGTGACACCCAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056116-'6-23,'6-19,8-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.204 A=0.000 C2=0.778
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=89.2)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGTGTTGGGCCCT
R:
CTTCTTGGGTGTCACGCCTTC
Band lengths:
254-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types